tibble [133 × 7] (S3: tbl_df/tbl/data.frame)
$ sample_id : chr [1:133] "SRR10245277" "SRR10245278" "SRR10245279" "SRR10245280" ...
$ ecosystem : chr [1:133] "Serengeti" "Serengeti" "Serengeti" "Selous" ...
$ isolate : chr [1:133] "Wildebeest" "Pig" "Eland" "Gazelle" ...
$ latitude : num [1:133] -2.15 -2.15 -2.15 -9 -9 ...
$ longitude : num [1:133] 34.7 34.7 34.7 37.5 37.5 ...
$ milionbases: num [1:133] 189 261 155 156 105 188 157 122 128 240 ...
$ description: chr [1:133] "Connochaetes taurinus" "Suidae" "Tragelaphus oryx" "Gazella" ...
# A tibble: 6 × 591
label Group numOtus Otu001 Otu002 Otu003 Otu004 Otu005 Otu006 Otu007 Otu008
<dbl> <chr> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl>
1 0.03 F3D0 588 500 296 394 404 633 168 356 164
2 0.03 F3D1 588 352 304 189 64 73 127 117 174
3 0.03 F3D141 588 388 325 303 482 426 205 279 327
4 0.03 F3D142 588 244 252 142 152 253 201 193 81
5 0.03 F3D143 588 189 150 173 206 310 116 183 92
6 0.03 F3D144 588 347 237 260 316 469 132 282 36
# … with 580 more variables: Otu009 <dbl>, Otu010 <dbl>, Otu011 <dbl>,
# Otu012 <dbl>, Otu013 <dbl>, Otu014 <dbl>, Otu015 <dbl>, Otu016 <dbl>,
# Otu017 <dbl>, Otu018 <dbl>, Otu019 <dbl>, Otu020 <dbl>, Otu021 <dbl>,
# Otu022 <dbl>, Otu023 <dbl>, Otu024 <dbl>, Otu025 <dbl>, Otu026 <dbl>,
# Otu027 <dbl>, Otu028 <dbl>, Otu029 <dbl>, Otu030 <dbl>, Otu031 <dbl>,
# Otu032 <dbl>, Otu033 <dbl>, Otu034 <dbl>, Otu035 <dbl>, Otu036 <dbl>,
# Otu037 <dbl>, Otu038 <dbl>, Otu039 <dbl>, Otu040 <dbl>, Otu041 <dbl>, …
# A tibble: 6 × 3
sample_id otu count
<chr> <chr> <dbl>
1 F3D0 otu001 500
2 F3D0 otu002 296
3 F3D0 otu003 394
4 F3D0 otu004 404
5 F3D0 otu005 633
6 F3D0 otu006 168
# A tibble: 6 × 28
otu F3D0 F3D1 F3D141 F3D142 F3D143 F3D144 F3D145 F3D146 F3D147 F3D148
<chr> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl>
1 otu001 500 352 388 244 189 347 568 272 1316 751
2 otu002 296 304 325 252 150 237 439 201 1090 650
3 otu003 394 189 303 142 173 260 461 225 820 521
4 otu004 404 64 482 152 206 316 527 370 1053 829
5 otu005 633 73 426 253 310 469 665 397 1621 1230
6 otu006 168 127 205 201 116 132 362 193 546 499
# … with 17 more variables: F3D149 <dbl>, F3D2 <dbl>, F3D3 <dbl>, F3D5 <dbl>,
# F3D6 <dbl>, F3D7 <dbl>, F3D8 <dbl>, F3D9 <dbl>, M1D0 <dbl>, M1D1 <dbl>,
# M1D2 <dbl>, Mock1 <dbl>, Mock2 <dbl>, Mock3 <dbl>, Water1 <dbl>,
# Water2 <dbl>, Water3 <dbl>
[1] "Dimension of the phylotype table table is 588 rows and 28 columns"
# A tibble: 6 × 3
OTU Size Taxonomy
<chr> <dbl> <chr>
1 Otu001 13221 Bacteria(100);Bacteroidetes(100);Bacteroidia(100);Bacteroidales(…
2 Otu002 10070 Bacteria(100);Bacteroidetes(100);Bacteroidia(100);Bacteroidales(…
3 Otu003 8352 Bacteria(100);Bacteroidetes(100);Bacteroidia(100);Bacteroidales(…
4 Otu004 8305 Bacteria(100);Bacteroidetes(100);Bacteroidia(100);Bacteroidales(…
5 Otu005 8251 Bacteria(100);Bacteroidetes(100);Bacteroidia(99);Bacteroidales(9…
6 Otu006 7973 Bacteria(100);Bacteroidetes(100);Bacteroidia(100);Bacteroidales(…
# A tibble: 6 × 8
otu pretty_otu kingdom phylum class order family genus
<chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr>
1 otu001 OTU 1 Bacteria Bacteroidetes Bacteroidia Bacteroidal… Bacte… Bact…
2 otu002 OTU 2 Bacteria Bacteroidetes Bacteroidia Bacteroidal… Bacte… Bact…
3 otu003 OTU 3 Bacteria Bacteroidetes Bacteroidia Bacteroidal… Bacte… Bact…
4 otu004 OTU 4 Bacteria Bacteroidetes Bacteroidia Bacteroidal… Bacte… Bact…
5 otu005 OTU 5 Bacteria Bacteroidetes Bacteroidia Bacteroidal… Bacte… Bact…
6 otu006 OTU 6 Bacteria Bacteroidetes Bacteroidia Bacteroidal… Bacte… Bact…